Publications

journal-articleMinimizing IP issues associated with gene constructs encoding the Bt toxin - a case study

Md Mahmudul Hassan
Francis Tenazas
Adam Williams
Jing-wen Chiu
Charles Robin
Derek A. Russell
John F. Golz

BMC Biotechnology

03/06/2024

DOI: https://doi.org/10.1186/s12896-024-00864-3

journal-articleUnraveling the genetic enigma of rice submergence tolerance: Shedding light on the role of ethylene response factor-encoding gene SUB1A-1

Md Ibrahim Khalil
Md Mahmudul Hassan
Swadesh Chandra Samanta
Abul Kashem Chowdhury
Md Zahid Hassan
Nasar Uddin Ahmed
Uzzal Somaddar
Sharmistha Ghosal
Arif Hasan Khan Robin
Ujjal Kumar Nath
Mohammad Golam Mostofa
David J. Burritt
Chien Van Ha
Aarti Gupta
Lam-Son Phan Tran
Gopal Saha

Plant Physiology and Biochemistry

01/2024

DOI: https://doi.org/10.1016/j.plaphy.2023.108224

journal-articleEstablishment of a genome editing tool using CRISPR-Cas9 ribonucleoprotein complexes in the non-model plant pathogen Sphaerulina musiva

Joanna Tannous
Cole Sawyer
Md Mahmudul Hassan
Jesse L. Labbe
Carrie Eckert
Md Mahmudul Hassan
Md Mahmudul Hassan

Frontiers in Genome Editing

21/07/2023

DOI: https://doi.org/10.3389/fgeed.2023.1110279

preprintThe Plasminogen-Apple-Nematode (PAN) domain suppresses JA/ET defense pathways in plants

Kuntal De
Debjani Pal
Carly M. Shanks
Timothy B. Yates
Kai Feng
Sara S. Jawdy
Md Mahmudul Hassan
Pradeep K. Prabhakar
Jeong-Yeh Yang
Digantkumar Chapla
Kelley W. Moremen
Breeanna Urbanowicz
Brad M Binder
Wellington Muchero

18/06/2023

DOI: https://doi.org/10.1101/2023.06.15.545202

journal-articleSplit selectable marker systems utilizing inteins facilitate gene stacking in plants

Guoliang Yuan
Haiwei Lu
Kuntal De
Md Mahmudul Hassan
Yang Liu
Md. Torikul Islam
Wellington Muchero
Gerald A. Tuskan
Xiaohan Yang

Communications Biology

26/05/2023

DOI: https://doi.org/10.1038/s42003-023-04950-8

journal-articleBiological and Molecular Components for Genetically Engineering Biosensors in Plants

Md Mahmudul Hassan
Yang Liu
guoliang yuan
Md Mahmudul Hassan
Paul Abraham
Julie C. Mitchell
Daniel Jacobson
Gerald A. Tuskan
Arjun Khakhar
June Medford
Cheng Zhao
Chang-Jun Liu
Carrie A. Eckert
Mitchel J. Doktycz
Timothy J. Tschaplinski
Xiaohan Yang

BioDesign Research

09/11/2022

DOI: https://doi.org/10.34133/2022/9863496

journal-articlePrecision genome editing in plants using gene targeting and prime editing: existing and emerging strategies

Md Mahmudul Hassan
Guoliang Yuan
Yang Liu
Mobashwer Alam
Carrie A. Eckert
Gerald A. Tuskan
John F. Golz
Xiaohan Yang

Biotechnology Journal

10/2022

DOI: https://doi.org/10.1002/biot.202100673

journal-articleGenome-wide identification and functional prediction of silicon (Si) transporters in poplar (Populus trichocarpa)

Md Mahmudul Hassan
Md Mahmudul Hassan
Md Mahmudul Hassan
Md Mahmudul Hassan
Md Mahmudul Hassan
Md Mahmudul Hassan

Plant Biotechnology Reports

17/09/2022

DOI: https://doi.org/10.1007/s11816-022-00788-4

journal-articlePARA: A New Platform for the Rapid Assembly of gRNA Arrays for Multiplexed CRISPR Technologies

Guoliang Yuan
Stanton Martin
Md Mahmudul Hassan
Gerald A. Tuskan
Xiaohan Yang

Cells

09/08/2022

DOI: https://doi.org/10.3390/cells11162467

journal-articleAn Intein-Mediated Split-nCas9 System for Base Editing in Plants.

Md Mahmudul Hassan

ACS synthetic biology

29/06/2022

journal-articleCharacterization of Bangladeshi Aus rice landraces under drought stress

SABRAO Journal of Breeding and Genetics

31/03/2022

DOI: https://doi.org/10.54910/sabrao2022.54.1.11

journal-articleExpanding the application of a UV-visible reporter for transient gene expression and stable transformation in plants

Horticulture Research

12/2021

DOI: https://doi.org/10.1038/s41438-021-00663-3

journal-articleBiological Parts for Plant Biodesign to Enhance Land-Based Carbon Dioxide Removal

BioDesign Research

29/11/2021

DOI: https://doi.org/10.34133/2021/9798714

preprintAn intein-mediated split–nCas9 system for base editing in plants

bioRxiv

09/10/2021

DOI: https://doi.org/10.1101/2021.10.08.463716

preprintPlant-based biosensors for detecting CRISPR-mediated genome engineering

bioRxiv

27/09/2021

DOI: https://doi.org/10.1101/2021.09.27.461852

journal-articleConstruct design for CRISPR/Cas-based genome editing in plants

Trends in Plant Science

07/2021

DOI: https://doi.org/10.1016/j.tplants.2021.06.015

journal-articleAdvances and perspectives in discovery and functional analysis of small secreted proteins in plants.

Horticulture research

01/06/2021

book-chapterIn Silico Analysis of gRNA Secondary Structure to Predict Its Efficacy for Plant Genome Editing

Springer Protocols Handbooks

2021

DOI: https://doi.org/10.1007/978-1-0716-1657-4_2

journal-articlePlant-Based Biosensors for Detecting CRISPR-Mediated Genome Engineering

Yuan, Guoliang
Hassan, Md Mahmudul
Yao, Tao
Lu, Haiwei
Vergara, Michael Melesse
Labbe, Jesse L.
Muchero, Wellington
Pan, Changtian
Chen, Jin-Gui
Tuskan, Gerald A.
Qi, Yiping
Abraham, Paul E.
Yang, Xiaohan

ACS Synthetic Biology

2021

DOI: https://doi.org/10.1021/ACSSYNBIO.1C00455

journal-articlePlant Biosystems Design Research Roadmap 1.0

BioDesign Research

05/12/2020

DOI: https://doi.org/10.34133/2020/8051764

journal-articleBiosystems Design to Accelerate C3-to-CAM Progression

BioDesign Research

12/10/2020

DOI: https://doi.org/10.34133/2020/3686791

journal-articlePrime Editing Technology and Its Prospects for Future Applications in Plant Biology Research

BioDesign Research

26/06/2020

DOI: https://doi.org/10.34133/2020/9350905

conference-abstractDiscovery and functional characterization of poplar mobile proteins involved in plant – fungal communication

Plant Biology 2020

06/2020

conference-posterExperimental characterization of protein movement from plants to ectomycorrhizal fungus

02/2020

conference-posterImproving the Safety and Outcome of Research Using Next-Generation Genome Engineering

2020 DOE Genome Meeting

02/2020

conference-paperCan Poplar Plants Use Mobile Protein Signals to Influence Mycorrhizal Fungi?

01/2020

book-chapterApplication of CRISPR-Cas Genome Editing Tools for the Improvement of Plant Abiotic Stress Tolerance

Approaches for Enhancing Abiotic Stress Tolerance in Plants

10/01/2019

DOI: https://doi.org/10.1201/9781351104722-26

dissertation-thesisDeveloping an improved strategy for gene targeting by homologous recombination for stacking insecticidal genes in Arabidopsis and Brassica crop plants

10/07/2018

journal-articleApplication of CRISPR/Cas9 Genome Editing Technology for the Improvement of Crops Cultivated in Tropical Climates: Recent Progress, Prospects, and Challenges

Frontiers in Plant Science

08/05/2018

DOI: https://doi.org/10.3389/fpls.2018.00617

conference-posterDevelopment of a germline-specific gene targeting system for Arabidopsis and Brassica species

5th Plant Genome and Gene Editing Congress ,Europe

16/03/2017

conference-posterImproving the efficiency of female germline transformation in Canola. Poster presented at the Brassica2016 conference

Brassica2016

04/10/2016

conference-paperEngineering flower structure for germline transformation of Brassica species

01/10/2015

journal-articleAn efficient protocol for somatic embryogenesis of garlic (Allium sativum L.) using root tip as explant

Journal of the Bangladesh Agricultural University

28/10/2014

DOI: https://doi.org/10.3329/jbau.v12i1.20747

journal-articleAnalysis of Genetic Diversity and Population Structure of Some Bangladeshi Rice Landraces and HYV

Journal of Scientific Research

29/08/2012

DOI: https://doi.org/10.3329/jsr.v4i3.10416

dissertation-thesisGenetic diversity analysis and phylogeny of rice cultivars as revealed by SSR markers

31/12/2010

journal-articleMolecular marker-based characterization and genetic diversity of wheat genotypes in relation to born use efficiency

Indian Journal of Genetics and Plant Breeding

01/11/2010

journal-articleMultivariate Analysis in Lentil (<i>Lens culinaris</i> L.)

Bangladesh Journal of Plant Breeding and Genetics

01/01/1970

DOI: https://doi.org/10.3329/bjpbg.v23i1.9312